GCC Code Coverage Report

Directory: gridformat/
File: gridformat/vtk/vtu_reader.hpp
Date: 2024-11-10 16:24:00
Exec Total Coverage
Lines: 49 51 96.1%
Functions: 12 12 100.0%
Branches: 42 82 51.2%
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1 // SPDX-FileCopyrightText: 2022-2023 Dennis Gläser <dennis.glaeser@iws.uni-stuttgart.de>
2 // SPDX-License-Identifier: MIT
3 /*!
4 * \file
5 * \ingroup VTK
6 * \copydoc GridFormat::VTUReader
7 */
8 #ifndef GRIDFORMAT_VTK_VTU_READER_HPP_
9 #define GRIDFORMAT_VTK_VTU_READER_HPP_
10
11 #include <string>
12 #include <optional>
13 #include <iterator>
14 #include <algorithm>
15 #include <utility>
16
17 #include <gridformat/common/string_conversion.hpp>
18 #include <gridformat/common/field.hpp>
19
20 #include <gridformat/grid/reader.hpp>
21 #include <gridformat/vtk/xml.hpp>
22
23 namespace GridFormat {
24
25 /*!
26 * \ingroup VTK
27 * \brief Reader for .vtu file format
28 */
29 class VTUReader : public GridReader {
30 private:
31 309 void _open(const std::string& filename, typename GridReader::FieldNames& fields) override {
32
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 309 auto helper = VTK::XMLReaderHelper::make_from(filename, "UnstructuredGrid");
33
34
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 300 _num_points = from_string<std::size_t>(helper.get("UnstructuredGrid/Piece").get_attribute("NumberOfPoints"));
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 300 _num_cells = from_string<std::size_t>(helper.get("UnstructuredGrid/Piece").get_attribute("NumberOfCells"));
36
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 300 VTK::XMLDetail::copy_field_names_from(helper.get("UnstructuredGrid"), fields);
37 300 _helper.emplace(std::move(helper));
38 300 }
39
40 53 void _close() override {
41 53 _helper.reset();
42 53 _num_points = 0;
43 53 _num_cells = 0;
44 53 }
45
46 43 std::string _name() const override {
47
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 86 return "VTUReader";
48 }
49
50 8339 std::size_t _number_of_cells() const override {
51 8339 return _num_cells;
52 }
53
54 1455 std::size_t _number_of_points() const override {
55 1455 return _num_points;
56 }
57
58 10 std::size_t _number_of_pieces() const override {
59 10 return 1;
60 }
61
62 87 bool _is_sequence() const override {
63 87 return false;
64 }
65
66 173 FieldPtr _points() const override {
67
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 173 return _helper.value().make_points_field("UnstructuredGrid/Piece/Points", _number_of_points());
68 }
69
70 281 void _visit_cells(const typename GridReader::CellVisitor& visitor) const override {
71
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 843 const auto types = _helper.value().make_data_array_field(
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 281 "types", "UnstructuredGrid/Piece/Cells", _number_of_cells()
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 281 )->template export_to<std::vector<std::uint_least8_t>>();
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 843 const auto offsets = _helper.value().make_data_array_field(
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 281 "offsets", "UnstructuredGrid/Piece/Cells", _number_of_cells()
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 281 )->template export_to<std::vector<std::size_t>>();
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 562 const auto connectivity = _helper.value().make_data_array_field(
78 "connectivity", "UnstructuredGrid/Piece/Cells"
79
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 281 )->template export_to<std::vector<std::size_t>>();
80 281 std::vector<std::size_t> corners;
81
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 6761 for (std::size_t i = 0; i < _number_of_cells(); ++i) {
82 6480 corners.clear();
83
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 6480 const std::size_t offset_begin = (i == 0 ? 0 : offsets.at(i-1));
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 6480 const std::size_t offset_end = offsets.at(i);
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 6480 if (connectivity.size() < offset_end)
86 ✗ throw SizeError("Connectivity array read from the file is too small");
87
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 6480 if (offset_end < offset_begin)
88 ✗ throw ValueError("Invalid offset array");
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 6480 std::copy_n(connectivity.begin() + offset_begin, offset_end - offset_begin, std::back_inserter(corners));
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 6480 visitor(VTK::cell_type(types.at(i)), corners);
91 }
92 281 }
93
94 691 FieldPtr _cell_field(std::string_view name) const override {
95
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 691 return _helper.value().make_data_array_field(name, "UnstructuredGrid/Piece/CellData", _number_of_cells());
96 }
97
98 706 FieldPtr _point_field(std::string_view name) const override {
99
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 706 return _helper.value().make_data_array_field(name, "UnstructuredGrid/Piece/PointData", _number_of_points());
100 }
101
102 57 FieldPtr _meta_data_field(std::string_view name) const override {
103
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 57 return _helper.value().make_data_array_field(name, "UnstructuredGrid/FieldData");
104 }
105
106 std::optional<VTK::XMLReaderHelper> _helper;
107 std::size_t _num_points;
108 std::size_t _num_cells;
109 };
110
111 } // namespace GridFormat
112
113 #endif // GRIDFORMAT_VTK_VTU_READER_HPP_
114