| Line | Branch | Exec | Source |
|---|---|---|---|
| 1 | // SPDX-FileCopyrightText: 2022-2023 Dennis Gläser <dennis.glaeser@iws.uni-stuttgart.de> | ||
| 2 | // SPDX-License-Identifier: MIT | ||
| 3 | /*! | ||
| 4 | * \file | ||
| 5 | * \ingroup VTK | ||
| 6 | * \copydoc GridFormat::PVTSWriter | ||
| 7 | */ | ||
| 8 | #ifndef GRIDFORMAT_VTK_PVTS_WRITER_HPP_ | ||
| 9 | #define GRIDFORMAT_VTK_PVTS_WRITER_HPP_ | ||
| 10 | |||
| 11 | #include <ostream> | ||
| 12 | #include <string> | ||
| 13 | #include <algorithm> | ||
| 14 | #include <filesystem> | ||
| 15 | #include <array> | ||
| 16 | #include <tuple> | ||
| 17 | #include <cmath> | ||
| 18 | |||
| 19 | #include <gridformat/common/field.hpp> | ||
| 20 | #include <gridformat/common/ranges.hpp> | ||
| 21 | #include <gridformat/common/exceptions.hpp> | ||
| 22 | #include <gridformat/common/lvalue_reference.hpp> | ||
| 23 | #include <gridformat/common/output_file.hpp> | ||
| 24 | |||
| 25 | #include <gridformat/parallel/communication.hpp> | ||
| 26 | #include <gridformat/parallel/helpers.hpp> | ||
| 27 | |||
| 28 | #include <gridformat/grid/grid.hpp> | ||
| 29 | #include <gridformat/xml/element.hpp> | ||
| 30 | #include <gridformat/vtk/parallel.hpp> | ||
| 31 | #include <gridformat/vtk/vts_writer.hpp> | ||
| 32 | |||
| 33 | namespace GridFormat { | ||
| 34 | |||
| 35 | /*! | ||
| 36 | * \ingroup VTK | ||
| 37 | * \brief Writer for parallel .pvts files | ||
| 38 | */ | ||
| 39 | template<Concepts::StructuredGrid Grid, | ||
| 40 | Concepts::Communicator Communicator> | ||
| 41 | class PVTSWriter : public VTK::XMLWriterBase<Grid, PVTSWriter<Grid, Communicator>> { | ||
| 42 | using ParentType = VTK::XMLWriterBase<Grid, PVTSWriter<Grid, Communicator>>; | ||
| 43 | using CT = CoordinateType<Grid>; | ||
| 44 | |||
| 45 | static constexpr std::size_t space_dim = 3; | ||
| 46 | static constexpr std::size_t dim = dimension<Grid>; | ||
| 47 | static constexpr int root_rank = 0; | ||
| 48 | |||
| 49 | public: | ||
| 50 | 12255 | explicit PVTSWriter(LValueReferenceOf<const Grid> grid, | |
| 51 | Communicator comm, | ||
| 52 | VTK::XMLOptions xml_opts = {}) | ||
| 53 | 12255 | : ParentType(grid.get(), ".pvts", true, xml_opts) | |
| 54 |
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36765 | , _comm(comm) |
| 55 | 12255 | {} | |
| 56 | |||
| 57 | 26 | const Communicator& communicator() const { | |
| 58 | 26 | return _comm; | |
| 59 | } | ||
| 60 | |||
| 61 | private: | ||
| 62 | Communicator _comm; | ||
| 63 | |||
| 64 | 8400 | PVTSWriter _with(VTK::XMLOptions xml_opts) const override { | |
| 65 |
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8400 | return PVTSWriter{this->grid(), _comm, std::move(xml_opts)}; |
| 66 | } | ||
| 67 | |||
| 68 | ✗ | void _write(std::ostream&) const override { | |
| 69 | ✗ | throw InvalidState( | |
| 70 | "PVTSWriter does not support direct export into stream. " | ||
| 71 | "Use overload with filename instead!" | ||
| 72 | ); | ||
| 73 | } | ||
| 74 | |||
| 75 | 4117 | virtual void _write(const std::string& filename_with_ext) const override { | |
| 76 |
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4117 | const auto& local_extents = extents(this->grid()); |
| 77 |
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4117 | const auto [origin, is_negative_axis] = _get_origin_and_orientations(local_extents); |
| 78 | |||
| 79 | 4117 | PVTK::StructuredParallelGridHelper helper{_comm}; | |
| 80 |
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4117 | const auto all_origins = Parallel::gather(_comm, origin, root_rank); |
| 81 |
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4117 | const auto all_extents = Parallel::gather(_comm, local_extents, root_rank); |
| 82 |
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4117 | const auto [exts_begin, exts_end, whole_extent, _] = helper.compute_extents_and_origin( |
| 83 | all_origins, | ||
| 84 | all_extents, | ||
| 85 | is_negative_axis | ||
| 86 | ); | ||
| 87 | |||
| 88 |
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4117 | const auto my_whole_extent = Parallel::broadcast(_comm, whole_extent, root_rank); |
| 89 |
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4117 | const auto my_extent_offset = Parallel::scatter(_comm, Ranges::flat(exts_begin), root_rank); |
| 90 | |||
| 91 | // the collective invocations also ensure that all pieces are written before the main file, | ||
| 92 | // and that the main file is written before returning | ||
| 93 |
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7957 | Parallel::invoke_collectively(_comm, [&] () { |
| 94 |
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2077 | _write_piece(filename_with_ext, Ranges::to_array<dim>(my_extent_offset), {my_whole_extent}); |
| 95 |
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9198 | }, "Writing the pieces of '" + filename_with_ext + "'"); |
| 96 |
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7235 | Parallel::invoke_collectively(_comm, [&] () { |
| 97 |
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1835 | if (Parallel::rank(_comm) == 0) |
| 98 | 618 | _write_pvts_file(filename_with_ext, my_whole_extent, exts_begin, exts_end); | |
| 99 |
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7276 | }, "Writing '" + filename_with_ext + "'"); |
| 100 | 5572 | } | |
| 101 | |||
| 102 | 4117 | auto _get_origin_and_orientations(const std::ranges::range auto& extents) const { | |
| 103 | 4117 | auto is_negative_axis = Ranges::filled_array<dim>(false); | |
| 104 |
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15541 | std::ranges::for_each(extents, [&, dir=0] (const auto& e) mutable { |
| 105 |
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5786 | if (e > 0) |
| 106 | 5786 | is_negative_axis[dir] = _is_negative_axis(dir); | |
| 107 | 5786 | dir++; | |
| 108 | }); | ||
| 109 | |||
| 110 | std::array<CT, dim> origin; | ||
| 111 | static constexpr auto origin_loc = _origin_location(); | ||
| 112 |
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73452 | for (const auto& p : points(this->grid())) { |
| 113 | 73434 | const auto& loc = location(this->grid(), p); | |
| 114 |
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73434 | const auto& pos = coordinates(this->grid(), p); |
| 115 |
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73434 | if (std::ranges::equal(loc, origin_loc)) { |
| 116 |
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4117 | std::ranges::copy(pos, origin.begin()); |
| 117 | 4126 | return std::make_tuple(std::move(origin), std::move(is_negative_axis)); | |
| 118 | } | ||
| 119 | } | ||
| 120 | |||
| 121 | ✗ | throw InvalidState("Could not determine origin"); | |
| 122 | } | ||
| 123 | |||
| 124 | static constexpr auto _origin_location() { | ||
| 125 | std::array<std::size_t, dim> origin; | ||
| 126 | std::ranges::fill(origin, 0); | ||
| 127 | return origin; | ||
| 128 | } | ||
| 129 | |||
| 130 | 11498 | bool _is_negative_axis(unsigned axis) const { | |
| 131 |
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16288 | for (const auto& p0 : points(this->grid())) { |
| 132 |
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16252 | const auto i0 = Ranges::at(axis, location(this->grid(), p0)); |
| 133 |
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16252 | const auto x0 = Ranges::at(axis, coordinates(this->grid(), p0)); |
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207402 | for (const auto& p1 : points(this->grid())) { |
| 135 |
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202512 | const auto i1 = Ranges::at(axis, location(this->grid(), p1)); |
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202512 | const auto x1 = Ranges::at(axis, coordinates(this->grid(), p1)); |
| 137 |
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202512 | if (i1 > i0) |
| 138 | 11516 | return x1 < x0; | |
| 139 | } | ||
| 140 | } | ||
| 141 | ✗ | throw InvalidState("Could not determine axis orientation"); | |
| 142 | } | ||
| 143 | |||
| 144 | 4117 | void _write_piece(const std::string& par_filename, | |
| 145 | const std::array<std::size_t, dim>& offset, | ||
| 146 | typename VTSWriter<Grid>::Domain domain) const { | ||
| 147 |
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8234 | auto writer = VTSWriter{this->grid(), this->_xml_opts} |
| 148 |
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8234 | .as_piece_for(std::move(domain)) |
| 149 | .with_offset(offset); | ||
| 150 |
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4117 | this->copy_fields(writer); |
| 151 |
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4598 | writer.write(PVTK::piece_basefilename(par_filename, Parallel::rank(_comm))); |
| 152 | 4117 | } | |
| 153 | |||
| 154 | 1218 | void _write_pvts_file(const std::string& filename_with_ext, | |
| 155 | const std::array<std::size_t, dim>& extents, | ||
| 156 | const std::vector<std::array<std::size_t, dim>>& proc_extents_begin, | ||
| 157 | const std::vector<std::array<std::size_t, dim>>& proc_extents_end) const { | ||
| 158 |
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2436 | XMLElement pvtk_xml("VTKFile"); |
| 159 |
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2436 | pvtk_xml.set_attribute("type", "PStructuredGrid"); |
| 160 | |||
| 161 |
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1218 | XMLElement& grid = pvtk_xml.add_child("PStructuredGrid"); |
| 162 |
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3654 | grid.set_attribute("WholeExtent", VTK::CommonDetail::extents_string(extents)); |
| 163 | |||
| 164 |
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2436 | XMLElement& ppoint_data = grid.add_child("PPointData"); |
| 165 |
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2436 | XMLElement& pcell_data = grid.add_child("PCellData"); |
| 166 |
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1218 | XMLElement& pcoords = grid.add_child("PPoints"); |
| 167 | 1272 | std::visit([&] (const auto& encoder) { | |
| 168 | 1890 | std::visit([&] (const auto& data_format) { | |
| 169 | 618 | PVTK::PDataArrayHelper pdata_helper{encoder, data_format, ppoint_data}; | |
| 170 | 618 | PVTK::PDataArrayHelper cdata_helper{encoder, data_format, pcell_data}; | |
| 171 |
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8122 | std::ranges::for_each(this->_point_field_names(), [&] (const std::string& name) { |
| 172 | 3676 | pdata_helper.add(name, this->_get_point_field(name)); | |
| 173 | }); | ||
| 174 |
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8122 | std::ranges::for_each(this->_cell_field_names(), [&] (const std::string& name) { |
| 175 | 3676 | cdata_helper.add(name, this->_get_cell_field(name)); | |
| 176 | }); | ||
| 177 | |||
| 178 | 1890 | std::visit([&] <typename T> (const Precision<T>& prec) { | |
| 179 |
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1236 | XMLElement& pdata_array = pcoords.add_child("PDataArray"); |
| 180 |
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1854 | pdata_array.set_attribute("NumberOfComponents", std::to_string(space_dim)); |
| 181 |
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1236 | pdata_array.set_attribute("Name", "Coordinates"); |
| 182 |
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1854 | pdata_array.set_attribute("format", VTK::data_format_name(encoder, data_format)); |
| 183 |
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1854 | pdata_array.set_attribute("type", VTK::attribute_name(prec)); |
| 184 |
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618 | }, this->_xml_settings.coordinate_precision); |
| 185 |
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618 | }, this->_xml_settings.data_format); |
| 186 |
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1218 | }, this->_xml_settings.encoder); |
| 187 | |||
| 188 |
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4818 | std::ranges::for_each(Parallel::ranks(_comm), [&] (int rank) { |
| 189 | std::array<std::size_t, dim> extents_begin; | ||
| 190 | std::array<std::size_t, dim> extents_end; | ||
| 191 |
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6945 | for (unsigned dir = 0; dir < dim; ++dir) { |
| 192 | 5110 | extents_begin[dir] = proc_extents_begin[rank][dir]; | |
| 193 | 5110 | extents_end[dir] = proc_extents_end[rank][dir]; | |
| 194 | } | ||
| 195 |
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3670 | auto& piece = grid.add_child("Piece"); |
| 196 |
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5505 | piece.set_attribute("Extent", VTK::CommonDetail::extents_string(extents_begin, extents_end)); |
| 197 |
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5505 | piece.set_attribute("Source", std::filesystem::path{ |
| 198 |
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3670 | PVTK::piece_basefilename(filename_with_ext, rank) + ".vts" |
| 199 |
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5505 | }.filename()); |
| 200 | }); | ||
| 201 | |||
| 202 |
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1218 | this->_set_default_active_fields(pvtk_xml.get_child("PStructuredGrid")); |
| 203 |
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2418 | write_to(filename_with_ext, [&] (std::ostream& s) { |
| 204 |
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616 | write_xml_with_version_header(pvtk_xml, s, Indentation{{.width = 2}}); |
| 205 | }); | ||
| 206 | 1218 | } | |
| 207 | }; | ||
| 208 | |||
| 209 | template<typename G, Concepts::Communicator C> | ||
| 210 | PVTSWriter(G&&, const C&, VTK::XMLOptions = {}) -> PVTSWriter<std::remove_cvref_t<G>, C>; | ||
| 211 | |||
| 212 | } // namespace GridFormat | ||
| 213 | |||
| 214 | #endif // GRIDFORMAT_VTK_PVTS_WRITER_HPP_ | ||
| 215 |