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|---|---|---|---|
| 1 | // SPDX-FileCopyrightText: 2022-2023 Dennis Gläser <dennis.glaeser@iws.uni-stuttgart.de> | ||
| 2 | // SPDX-License-Identifier: MIT | ||
| 3 | /*! | ||
| 4 | * \file | ||
| 5 | * \ingroup VTK | ||
| 6 | * \copydoc GridFormat::PVTRWriter | ||
| 7 | */ | ||
| 8 | #ifndef GRIDFORMAT_VTK_PVTR_WRITER_HPP_ | ||
| 9 | #define GRIDFORMAT_VTK_PVTR_WRITER_HPP_ | ||
| 10 | |||
| 11 | #include <ostream> | ||
| 12 | #include <string> | ||
| 13 | #include <algorithm> | ||
| 14 | #include <filesystem> | ||
| 15 | #include <array> | ||
| 16 | #include <tuple> | ||
| 17 | |||
| 18 | #include <gridformat/common/field.hpp> | ||
| 19 | #include <gridformat/common/ranges.hpp> | ||
| 20 | #include <gridformat/common/exceptions.hpp> | ||
| 21 | #include <gridformat/common/lvalue_reference.hpp> | ||
| 22 | #include <gridformat/common/output_file.hpp> | ||
| 23 | |||
| 24 | #include <gridformat/parallel/communication.hpp> | ||
| 25 | #include <gridformat/parallel/helpers.hpp> | ||
| 26 | |||
| 27 | #include <gridformat/grid/grid.hpp> | ||
| 28 | #include <gridformat/xml/element.hpp> | ||
| 29 | #include <gridformat/vtk/parallel.hpp> | ||
| 30 | #include <gridformat/vtk/vtr_writer.hpp> | ||
| 31 | |||
| 32 | namespace GridFormat { | ||
| 33 | |||
| 34 | /*! | ||
| 35 | * \ingroup VTK | ||
| 36 | * \brief Writer for parallel .pvtr files | ||
| 37 | */ | ||
| 38 | template<Concepts::RectilinearGrid Grid, | ||
| 39 | Concepts::Communicator Communicator> | ||
| 40 | class PVTRWriter : public VTK::XMLWriterBase<Grid, PVTRWriter<Grid, Communicator>> { | ||
| 41 | using ParentType = VTK::XMLWriterBase<Grid, PVTRWriter<Grid, Communicator>>; | ||
| 42 | using CT = CoordinateType<Grid>; | ||
| 43 | |||
| 44 | static constexpr std::size_t space_dim = 3; | ||
| 45 | static constexpr std::size_t dim = dimension<Grid>; | ||
| 46 | static constexpr int root_rank = 0; | ||
| 47 | |||
| 48 | public: | ||
| 49 | 12265 | explicit PVTRWriter(LValueReferenceOf<const Grid> grid, | |
| 50 | Communicator comm, | ||
| 51 | VTK::XMLOptions xml_opts = {}) | ||
| 52 | 12265 | : ParentType(grid.get(), ".pvtr", true, xml_opts) | |
| 53 |
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36795 | , _comm(comm) |
| 54 | 12265 | {} | |
| 55 | |||
| 56 | 26 | const Communicator& communicator() const { | |
| 57 | 26 | return _comm; | |
| 58 | } | ||
| 59 | |||
| 60 | private: | ||
| 61 | Communicator _comm; | ||
| 62 | |||
| 63 | 8400 | PVTRWriter _with(VTK::XMLOptions xml_opts) const override { | |
| 64 |
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8400 | return PVTRWriter{this->grid(), _comm, std::move(xml_opts)}; |
| 65 | } | ||
| 66 | |||
| 67 | ✗ | void _write(std::ostream&) const override { | |
| 68 | ✗ | throw InvalidState( | |
| 69 | "PVTRWriter does not support direct export into stream. " | ||
| 70 | "Use overload with filename instead!" | ||
| 71 | ); | ||
| 72 | } | ||
| 73 | |||
| 74 | 4127 | virtual void _write(const std::string& filename_with_ext) const override { | |
| 75 |
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4127 | const auto& local_extents = extents(this->grid()); |
| 76 |
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4127 | const auto [origin, is_negative_axis] = _get_origin_and_orientations(); |
| 77 | |||
| 78 | 4127 | PVTK::StructuredParallelGridHelper helper{_comm}; | |
| 79 |
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4127 | const auto all_origins = Parallel::gather(_comm, origin, root_rank); |
| 80 |
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4127 | const auto all_extents = Parallel::gather(_comm, local_extents, root_rank); |
| 81 |
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4127 | const auto [exts_begin, exts_end, whole_extent, _] = helper.compute_extents_and_origin( |
| 82 | all_origins, | ||
| 83 | all_extents, | ||
| 84 | is_negative_axis | ||
| 85 | ); | ||
| 86 | |||
| 87 |
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4127 | const auto my_whole_extent = Parallel::broadcast(_comm, whole_extent, root_rank); |
| 88 |
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4127 | const auto my_extent_offset = Parallel::scatter(_comm, Ranges::flat(exts_begin), root_rank); |
| 89 | |||
| 90 | // the collective invocations also ensure that all pieces are written before the main file, | ||
| 91 | // and that the main file is written before returning | ||
| 92 |
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7967 | Parallel::invoke_collectively(_comm, [&] () { |
| 93 |
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2087 | _write_piece(filename_with_ext, Ranges::to_array<dim>(my_extent_offset), {my_whole_extent}); |
| 94 |
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9218 | }, "Writing the pieces of '" + filename_with_ext + "'"); |
| 95 |
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7245 | Parallel::invoke_collectively(_comm, [&] () { |
| 96 |
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1845 | if (Parallel::rank(_comm) == 0) |
| 97 | 621 | _write_pvtr_file(filename_with_ext, my_whole_extent, exts_begin, exts_end); | |
| 98 |
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7296 | }, "Writing '" + filename_with_ext + "'"); |
| 99 | 5582 | } | |
| 100 | |||
| 101 | 4127 | auto _get_origin_and_orientations() const { | |
| 102 | std::array<CT, dim> origin; | ||
| 103 | std::array<bool, dim> is_negative_axis; | ||
| 104 |
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15645 | for (unsigned dir = 0; dir < dim; ++dir) { |
| 105 | 11518 | std::array<CT, 2> ordinates_01{0, 0}; | |
| 106 |
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11518 | const auto& dir_ordinates = ordinates(this->grid(), dir); |
| 107 |
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11518 | std::ranges::copy(std::views::take(dir_ordinates, 2), ordinates_01.begin()); |
| 108 | 11518 | origin[dir] = ordinates_01[0]; | |
| 109 | 11518 | is_negative_axis[dir] = ordinates_01[1] - ordinates_01[0] < CT{0}; | |
| 110 | } | ||
| 111 | 8254 | return std::make_tuple(origin, is_negative_axis); | |
| 112 | } | ||
| 113 | |||
| 114 | 4127 | void _write_piece(const std::string& par_filename, | |
| 115 | const std::array<std::size_t, dim>& offset, | ||
| 116 | typename VTRWriter<Grid>::Domain domain) const { | ||
| 117 |
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8254 | auto writer = VTRWriter{this->grid(), this->_xml_opts} |
| 118 |
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8254 | .as_piece_for(std::move(domain)) |
| 119 | .with_offset(offset); | ||
| 120 |
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4127 | this->copy_fields(writer); |
| 121 |
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4608 | writer.write(PVTK::piece_basefilename(par_filename, Parallel::rank(_comm))); |
| 122 | 4127 | } | |
| 123 | |||
| 124 | 1221 | void _write_pvtr_file(const std::string& filename_with_ext, | |
| 125 | const std::array<std::size_t, dim>& extents, | ||
| 126 | const std::vector<std::array<std::size_t, dim>>& proc_extents_begin, | ||
| 127 | const std::vector<std::array<std::size_t, dim>>& proc_extents_end) const { | ||
| 128 |
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2442 | XMLElement pvtk_xml("VTKFile"); |
| 129 |
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2442 | pvtk_xml.set_attribute("type", "PRectilinearGrid"); |
| 130 | |||
| 131 |
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1221 | XMLElement& grid = pvtk_xml.add_child("PRectilinearGrid"); |
| 132 |
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3663 | grid.set_attribute("WholeExtent", VTK::CommonDetail::extents_string(extents)); |
| 133 | |||
| 134 |
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2442 | XMLElement& ppoint_data = grid.add_child("PPointData"); |
| 135 |
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2442 | XMLElement& pcell_data = grid.add_child("PCellData"); |
| 136 |
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1221 | XMLElement& pcoords = grid.add_child("PCoordinates"); |
| 137 | 1284 | std::visit([&] (const auto& encoder) { | |
| 138 | 1905 | std::visit([&] (const auto& data_format) { | |
| 139 | 621 | PVTK::PDataArrayHelper pdata_helper{encoder, data_format, ppoint_data}; | |
| 140 | 621 | PVTK::PDataArrayHelper cdata_helper{encoder, data_format, pcell_data}; | |
| 141 |
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8137 | std::ranges::for_each(this->_point_field_names(), [&] (const std::string& name) { |
| 142 | 3679 | pdata_helper.add(name, this->_get_point_field(name)); | |
| 143 | }); | ||
| 144 |
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8133 | std::ranges::for_each(this->_cell_field_names(), [&] (const std::string& name) { |
| 145 | 3678 | cdata_helper.add(name, this->_get_cell_field(name)); | |
| 146 | }); | ||
| 147 | |||
| 148 | 1263 | std::visit([&] <typename T> (const Precision<T>& prec) { | |
| 149 |
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2484 | for (unsigned int i = 0; i < space_dim; ++i) { |
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3726 | XMLElement& pdata_array = pcoords.add_child("PDataArray"); |
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3726 | pdata_array.set_attribute("NumberOfComponents", "1"); |
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5589 | pdata_array.set_attribute("Name", "X_" + std::to_string(i)); |
| 153 |
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5589 | pdata_array.set_attribute("format", VTK::data_format_name(encoder, data_format)); |
| 154 |
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5589 | pdata_array.set_attribute("type", VTK::attribute_name(prec)); |
| 155 | } | ||
| 156 |
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621 | }, this->_xml_settings.coordinate_precision); |
| 157 |
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621 | }, this->_xml_settings.data_format); |
| 158 |
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1221 | }, this->_xml_settings.encoder); |
| 159 | |||
| 160 |
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4821 | std::ranges::for_each(Parallel::ranks(_comm), [&] (int rank) { |
| 161 | std::array<std::size_t, dim> extents_begin; | ||
| 162 | std::array<std::size_t, dim> extents_end; | ||
| 163 |
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6975 | for (unsigned dir = 0; dir < dim; ++dir) { |
| 164 | 5130 | extents_begin[dir] = proc_extents_begin[rank][dir]; | |
| 165 | 5130 | extents_end[dir] = proc_extents_end[rank][dir]; | |
| 166 | } | ||
| 167 |
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3690 | auto& piece = grid.add_child("Piece"); |
| 168 |
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5535 | piece.set_attribute("Extent", VTK::CommonDetail::extents_string(extents_begin, extents_end)); |
| 169 |
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5535 | piece.set_attribute("Source", std::filesystem::path{ |
| 170 |
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3690 | PVTK::piece_basefilename(filename_with_ext, rank) + ".vtr" |
| 171 |
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5535 | }.filename()); |
| 172 | }); | ||
| 173 | |||
| 174 |
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1221 | this->_set_default_active_fields(pvtk_xml.get_child("PRectilinearGrid")); |
| 175 |
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2421 | write_to(filename_with_ext, [&] (std::ostream& s) { |
| 176 |
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619 | write_xml_with_version_header(pvtk_xml, s, Indentation{{.width = 2}}); |
| 177 | }); | ||
| 178 | 1221 | } | |
| 179 | }; | ||
| 180 | |||
| 181 | template<typename G, Concepts::Communicator C> | ||
| 182 | PVTRWriter(G&&, const C&, VTK::XMLOptions = {}) -> PVTRWriter<std::remove_cvref_t<G>, C>; | ||
| 183 | |||
| 184 | namespace Traits { | ||
| 185 | |||
| 186 | template<typename... Args> | ||
| 187 | struct WritesConnectivity<PVTRWriter<Args...>> : public std::false_type {}; | ||
| 188 | |||
| 189 | } // namespace Traits | ||
| 190 | } // namespace GridFormat | ||
| 191 | |||
| 192 | #endif // GRIDFORMAT_VTK_PVTR_WRITER_HPP_ | ||
| 193 |