GCC Code Coverage Report

Directory: gridformat/
File: gridformat/grid/converter.hpp
Date: 2024-11-20 14:41:59
Exec Total Coverage
Lines: 92 114 80.7%
Functions: 67 87 77.0%
Branches: 59 206 28.6%
Line Branch Exec Source
1 // SPDX-FileCopyrightText: 2022-2023 Dennis Gläser <dennis.glaeser@iws.uni-stuttgart.de>
2 // SPDX-License-Identifier: MIT
3 /*!
4 * \file
5 * \ingroup Grid
6 * \brief Converter between grid formats.
7 */
8 #ifndef GRIDFORMAT_GRID_CONVERTER_HPP_
9 #define GRIDFORMAT_GRID_CONVERTER_HPP_
10
11 #include <array>
12 #include <vector>
13 #include <ranges>
14 #include <concepts>
15 #include <utility>
16 #include <numeric>
17 #include <optional>
18 #include <cstdint>
19
20 #include <gridformat/common/field.hpp>
21 #include <gridformat/common/exceptions.hpp>
22
23 #include <gridformat/grid/cell_type.hpp>
24 #include <gridformat/grid/reader.hpp>
25 #include <gridformat/grid/writer.hpp>
26
27 namespace GridFormat {
28
29 #ifndef DOXYGEN
30 namespace ConverterDetail {
31
32 struct ConverterGrid {
33 const GridReader& reader;
34 std::vector<std::array<double, 3>> points;
35 std::vector<std::pair<CellType, std::vector<std::size_t>>> cells;
36
37 35 explicit ConverterGrid(const GridReader& r) : reader{r} {}
38
39 81 void make_grid() {
40 81 points.clear();
41 81 cells.clear();
42 81 _make_points();
43 81 _make_cells();
44 81 }
45
46 private:
47 81 void _make_points() {
48
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 81 const auto in_points = reader.points();
49
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 81 const auto in_layout = in_points->layout();
50
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 81 const auto in_np = in_layout.extent(0);
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 81 const auto in_dim = in_layout.dimension() > 1 ? in_layout.extent(1) : 0;
52
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 81 if (in_np != reader.number_of_points())
53 ✗ throw SizeError("Mismatch between stored and defined number of points.");
54
55
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 81 points.reserve(in_np);
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 243 in_points->visit_field_values([&] <typename T> (std::span<const T> values) {
57
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 25646 std::ranges::for_each(std::views::iota(std::size_t{0}, in_np), [&] (auto p_idx) {
58
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 12742 points.push_back({});
59
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 89194 std::ranges::for_each(std::views::iota(std::size_t{0}, in_dim), [&] (auto dim) {
60 38226 points.back().at(dim) = static_cast<double>(values[p_idx*in_dim + dim]);
61 });
62 });
63 162 });
64 81 }
65
66 81 void _make_cells() {
67 81 cells.reserve(reader.number_of_cells());
68
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 81 reader.visit_cells([&] (CellType ct, std::vector<std::size_t> corners) {
69
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 10380 cells.emplace_back(std::pair{std::move(ct), std::move(corners)});
70 10380 });
71
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 81 if (cells.size() != reader.number_of_cells())
72 ✗ throw SizeError("Mismatch between stored and defined number of cells.");
73 81 }
74 };
75
76 template<typename T>
77 concept Writer
78 = requires { typename std::remove_cvref_t<T>::Grid; }
79 and std::derived_from<std::remove_cvref_t<T>, GridWriterBase<typename T::Grid>>;
80
81 template<typename T>
82 concept PieceWriter = Writer<T> and std::derived_from<std::remove_cvref_t<T>, GridWriter<typename T::Grid>>;
83
84 template<typename T>
85 concept TimeSeriesWriter = Writer<T> and std::derived_from<std::remove_cvref_t<T>, TimeSeriesGridWriter<typename T::Grid>>;
86
87 template<typename T>
88 concept PieceWriterFactory = requires (const T& factory, const ConverterGrid& grid) {
89 { factory(grid) } -> PieceWriter;
90 };
91
92 template<typename T>
93 concept TimeSeriesWriterFactory = requires (const T& factory, const ConverterGrid& grid, const std::string& filename) {
94 { factory(grid) } -> TimeSeriesWriter;
95 };
96
97 template<typename T>
98 concept WriterFactory = PieceWriterFactory<T> or TimeSeriesWriterFactory<T>;
99
100 template<typename Reader, Writer Writer>
101 166 void add_piece_fields(const Reader& reader, Writer& writer) {
102 166 writer.clear();
103
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 400 for (auto [name, field_ptr] : cell_fields(reader))
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 234 writer.set_cell_field(std::move(name), std::move(field_ptr));
105
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 538 for (auto [name, field_ptr] : point_fields(reader))
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 372 writer.set_point_field(std::move(name), std::move(field_ptr));
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 166 for (auto [name, field_ptr] : meta_data_fields(reader))
108 ✗ writer.set_meta_data(std::move(name), std::move(field_ptr));
109 166 }
110
111 template<typename Reader, PieceWriter Writer>
112 44 std::string write_piece(const Reader& reader, Writer& writer, const std::string& filename) {
113 44 add_piece_fields(reader, writer);
114 44 return writer.write(filename);
115 }
116
117 template<typename Reader, TimeSeriesWriter Writer>
118 105 std::string write_piece(const Reader& reader, Writer& writer, double time_step) {
119 105 add_piece_fields(reader, writer);
120 105 return writer.write(time_step);
121 }
122
123 } // namespace ConverterDetail
124 #endif // DOXYGEN
125
126 /*!
127 * \ingroup Grid
128 * \brief Convert between grid formats.
129 * \param reader A grid reader on which a file was opened.
130 * \param factory A factory to construct a writer with the desired output format.
131 * \param filename The name of the file to be written.
132 */
133 template<std::derived_from<GridReader> Reader, ConverterDetail::WriterFactory Factory>
134 44 std::string convert(const Reader& reader, const std::string& filename, const Factory& factory) {
135 44 ConverterDetail::ConverterGrid grid{reader};
136
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 44 auto writer = factory(grid);
137
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 44 if (reader.filename() == filename + writer.extension())
138 ✗ throw GridFormat::IOError("Cannot read/write from/to the same file");
139 if constexpr (Traits::WritesConnectivity<std::remove_cvref_t<decltype(writer)>>::value)
140
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 40 grid.make_grid();
141
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 88 return ConverterDetail::write_piece(reader, writer, filename);
142 44 }
143
144 /*!
145 * \ingroup Grid
146 * \brief Overload for time series formats.
147 * \param reader A grid reader on which a file was opened.
148 * \param factory A factory to construct a time series writer with the desired output format.
149 * \param call_back (optional) A callback that is invoked after writing each step.
150 */
151 template<std::derived_from<GridReader> Reader,
152 ConverterDetail::TimeSeriesWriterFactory Factory,
153 15 std::invocable<std::size_t, const std::string&> StepCallBack = decltype([] (std::size_t, const std::string&) {})>
154 21 std::string convert(Reader& reader,
155 const Factory& factory,
156 const StepCallBack& call_back = {}) {
157
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 21 if (!reader.is_sequence())
158 ✗ throw ValueError("Cannot convert data from reader to a sequence as the file read is no sequence.");
159
160 21 ConverterDetail::ConverterGrid grid{reader};
161
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 21 auto writer = factory(grid);
162 21 std::string filename;
163
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 126 for (std::size_t step = 0; step < reader.number_of_steps(); ++step) {
164
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 105 reader.set_step(step);
165 if constexpr (Traits::WritesConnectivity<std::remove_cvref_t<decltype(writer)>>::value)
166
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 105 grid.make_grid();
167
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 105 filename = ConverterDetail::write_piece(reader, writer, reader.time_at_step(step));
168
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 105 call_back(step, filename);
169 }
170 21 return filename;
171 21 }
172
173 namespace Traits {
174
175 // to distinguish points/cells we use different integer types
176
177 template<>
178 struct Points<ConverterDetail::ConverterGrid> {
179 162 static std::ranges::range auto get(const ConverterDetail::ConverterGrid& grid) {
180
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 162 return std::views::iota(std::size_t{0}, grid.reader.number_of_points());
181 }
182 };
183
184 template<>
185 struct Cells<ConverterDetail::ConverterGrid> {
186 243 static std::ranges::range auto get(const ConverterDetail::ConverterGrid& grid) {
187
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 243 const auto max = static_cast<std::int64_t>(grid.reader.number_of_cells());
188
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 243 if (max < 0)
189 ✗ throw TypeError("Integer overflow. Too many grid cells.");
190
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 243 return std::views::iota(std::int64_t{0}, max);
191 }
192 };
193
194 template<>
195 struct NumberOfPoints<ConverterDetail::ConverterGrid> {
196 411 static std::size_t get(const ConverterDetail::ConverterGrid& grid) {
197 411 return grid.reader.number_of_points();
198 }
199 };
200
201 template<>
202 struct NumberOfCells<ConverterDetail::ConverterGrid> {
203 413 static std::size_t get(const ConverterDetail::ConverterGrid& grid) {
204 413 return grid.reader.number_of_cells();
205 }
206 };
207
208 template<>
209 struct CellPoints<ConverterDetail::ConverterGrid, std::int64_t> {
210 10380 static std::ranges::range auto get(const ConverterDetail::ConverterGrid& grid, const std::int64_t i) {
211 10380 return grid.cells.at(i).second | std::views::all;
212 }
213 };
214
215 template<>
216 struct CellType<ConverterDetail::ConverterGrid, std::int64_t> {
217 10380 static GridFormat::CellType get(const ConverterDetail::ConverterGrid& grid, const std::int64_t i) {
218 10380 return grid.cells.at(i).first;
219 }
220 };
221
222 template<>
223 struct PointCoordinates<ConverterDetail::ConverterGrid, std::size_t> {
224 12742 static std::array<double, 3> get(const ConverterDetail::ConverterGrid& grid, const std::size_t i) {
225 12742 return grid.points.at(i);
226 }
227 };
228
229 template<>
230 struct PointId<ConverterDetail::ConverterGrid, std::size_t> {
231 70364 static std::size_t get(const ConverterDetail::ConverterGrid&, const std::size_t i) {
232 70364 return i;
233 }
234 };
235
236 template<>
237 struct NumberOfCellPoints<ConverterDetail::ConverterGrid, std::int64_t> {
238 20760 static std::size_t get(const ConverterDetail::ConverterGrid& grid, const std::int64_t i) {
239 20760 return grid.cells.at(i).second.size();
240 }
241 };
242
243 template<>
244 struct Origin<ConverterDetail::ConverterGrid> {
245 2 static std::array<double, 3> get(const ConverterDetail::ConverterGrid& grid) {
246 2 return grid.reader.origin();
247 }
248 };
249
250 template<>
251 struct Spacing<ConverterDetail::ConverterGrid> {
252 2 static std::array<double, 3> get(const ConverterDetail::ConverterGrid& grid) {
253 2 return grid.reader.spacing();
254 }
255 };
256
257 template<>
258 struct Basis<ConverterDetail::ConverterGrid> {
259 2 static std::array<std::array<double, 3>, 3> get(const ConverterDetail::ConverterGrid& grid) {
260 std::array<std::array<double, 3>, 3> result;
261
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 8 for (unsigned int i = 0; i < 3; ++i)
262 6 result[i] = grid.reader.basis_vector(i);
263 2 return result;
264 }
265 };
266
267 template<>
268 struct Extents<ConverterDetail::ConverterGrid> {
269 3 static std::array<std::size_t, 3> get(const ConverterDetail::ConverterGrid& grid) {
270 3 return grid.reader.extents();
271 }
272 };
273
274 template<>
275 struct Ordinates<ConverterDetail::ConverterGrid> {
276 static std::vector<double> get(const ConverterDetail::ConverterGrid& grid, unsigned int i) {
277 return grid.reader.ordinates(i);
278 }
279 };
280
281 template<typename Entity>
282 struct Location<ConverterDetail::ConverterGrid, Entity> {
283 ✗ static std::array<std::size_t, 3> get(const ConverterDetail::ConverterGrid& grid, const std::size_t point) {
284 ✗ return _get(Ranges::incremented(Extents<ConverterDetail::ConverterGrid>::get(grid), 1), point);
285 }
286
287 ✗ static std::array<std::size_t, 3> get(const ConverterDetail::ConverterGrid& grid, const std::int64_t cell) {
288 ✗ return _get(Extents<ConverterDetail::ConverterGrid>::get(grid), cell);
289 }
290
291 private:
292 ✗ static std::array<std::size_t, 3> _get(std::ranges::range auto extents, std::integral auto index) {
293 // avoid zero extents
294 ✗ std::ranges::for_each(extents, [] <std::integral T> (T& e) { e = std::max(e, T{1}); });
295 ✗ const auto accumulate_until = [&] (int dim) {
296 ✗ auto range = extents | std::views::take(dim);
297 ✗ return std::accumulate(
298 std::ranges::begin(range),
299 std::ranges::end(range),
300 std::size_t{1},
301 std::multiplies{}
302 ✗ );
303 };
304
305 ✗ const auto divisor1 = accumulate_until(1);
306 ✗ const auto divisor2 = accumulate_until(2);
307 return {
308 ✗ index%divisor2%divisor1,
309 ✗ index%divisor2/divisor1,
310 ✗ index/divisor2
311 ✗ };
312 }
313 };
314
315 } // namespace Traits
316 } // namespace GridFormat
317
318 #endif // GRIDFORMAT_GRID_CONVERTER_HPP_
319